Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1521FAD-linked oxidoreductase; KEGG: rsa:RSal33209_0022 FAD/FMN-containing dehydrogenase; TIGRFAM: FAD-linked oxidoreductase; PFAM: D-arabinono-14-lactone oxidase; FAD linked oxidase domain protein. (445 aa)    
Predicted Functional Partners:
Tpau_1520
PFAM: alanine racemase domain protein; KEGG: rsa:RSal33209_0021 hypothetical protein.
 
    0.963
Tpau_1519
KEGG: bur:Bcep18194_B3011 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
       0.555
Tpau_0809
KEGG: nfa:nfa6290 putative DNA helicase; PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
  
 
 
 0.470
Tpau_2916
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: rha:RHA1_ro06463 electron transfer flavoprotein alpha-subunit.
  
 
 0.446
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
     
 0.433
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
     
 0.432
Tpau_2917
PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: nfa:nfa42790 putative electron transfer flavoprotein beta subunit.
  
 
 0.422
Tpau_3173
NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
 0.421
Tpau_2693
PFAM: cytochrome c class I; KEGG: rop:ROP_08590 menaquinol-cytochrome c reductase cytochrome c subunit.
   
 
 0.412
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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