STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1532Channel protein, hemolysin III family; KEGG: rha:RHA1_ro05855 hemolytic factor; TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein. (218 aa)    
Predicted Functional Partners:
Tpau_1533
PFAM: Protein of unknown function DUF2236; KEGG: rer:RER_20960 hypothetical protein.
       0.773
Tpau_1534
KEGG: cai:Caci_0913 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR.
 
  
 0.673
Tpau_1531
PFAM: PfkB domain protein; KEGG: rer:RER_36040 adenosine kinase.
       0.628
Tpau_1535
KEGG: sgr:SGR_5218 hypothetical protein.
     
 0.616
Tpau_1005
PFAM: Carbohydrate kinase, FGGY-like; KEGG: rop:ROP_63250 glycerol kinase.
 
  
 0.461
Tpau_1530
KEGG: nfa:nfa17050 hypothetical protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
  
    0.459
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.420
Tpau_1118
DEAD/DEAH box helicase domain protein; KEGG: rop:ROP_64170 putative ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family.
 
 
 0.414
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
       0.408
Tpau_3424
KEGG: rer:RER_23370 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
 
 
 0.408
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.