Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Tpau_1548KEGG: mab:MAB_1173c hypothetical protein. (154 aa)    
Predicted Functional Partners:
Tpau_1549
KEGG: mab:MAB_1172c hypothetical protein.
 
  
 0.949
Tpau_1550
KEGG: mab:MAB_1171c hypothetical protein.
       0.778
Tpau_1054
Putative transcriptional regulator, XRE family; KEGG: rha:RHA1_ro08680 hypothetical protein.
  
     0.769
Tpau_0122
KEGG: stp:Strop_4198 hypothetical protein.
 
  
 0.699
Tpau_1373
Thioester reductase domain protein; KEGG: mab:MAB_2962 fatty-acid-CoA ligase FadD; TIGRFAM: thioester reductase domain protein; PFAM: Male sterility domain; AMP-dependent synthetase and ligase; phosphopantetheine-binding.
  
   
 0.652
Tpau_3222
KEGG: mth:MTH1892 hypothetical protein.
  
     0.563
Tpau_3223
KEGG: met:M446_0049 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
  
 
   0.555
Tpau_1551
KEGG: cmi:CMM_2461 hypothetical protein; Belongs to the SUA5 family.
  
    0.540
Tpau_1547
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_2283 putative short-chain dehydrogenase/reductase.
       0.511
Tpau_1964
PFAM: conserved hypothetical protein; KEGG: rop:ROP_69110 hypothetical membrane protein.
  
     0.477
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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