Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Tpau_1551KEGG: cmi:CMM_2461 hypothetical protein; Belongs to the SUA5 family. (258 aa)    
Predicted Functional Partners:
Tpau_1548
KEGG: mab:MAB_1173c hypothetical protein.
  
    0.540
Tpau_1549
KEGG: mab:MAB_1172c hypothetical protein.
       0.519
Tpau_1550
KEGG: mab:MAB_1171c hypothetical protein.
       0.519
Tpau_1545
PFAM: aconitate hydratase domain protein; KEGG: syd:Syncc9605_0257 3-isopropylmalate dehydratase, small subunit; Belongs to the LeuD family.
 
     0.459
Tpau_1546
PFAM: aconitate hydratase domain protein; KEGG: scl:sce0086 isopropylmalate isomerase large subunit.
 
     0.459
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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