Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1575KEGG: rop:ROP_58200 hypothetical protein. (298 aa)    
Predicted Functional Partners:
Tpau_1576
PFAM: phosphopantetheine-binding; KEGG: rer:RER_43060 acyl carrier protein.
 
 
   0.898
Tpau_1585
KEGG: rer:RER_42890 hypothetical protein.
 
     0.862
Tpau_1574
PFAM: protein of unknown function DUF350; KEGG: nfa:nfa41700 hypothetical protein.
       0.772
Tpau_1571
PFAM: acylphosphatase; KEGG: nfa:nfa41730 putative acylphosphatase.
       0.771
Tpau_1572
KEGG: ami:Amir_0114 hypothetical protein.
       0.771
Tpau_1573
PFAM: glutathionylspermidine synthase; KEGG: nfa:nfa41710 hypothetical protein.
       0.771
Tpau_1570
PFAM: OsmC family protein; KEGG: rha:RHA1_ro06525 hypothetical protein.
       0.768
Tpau_2823
KEGG: rha:RHA1_ro03102 hypothetical protein.
  
     0.713
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: rer:RER_32900 phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.577
Tpau_4241
Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
  
    0.563
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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