Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Tpau_1606PFAM: monooxygenase FAD-binding; KEGG: mab:MAB_1646c hypothetical protein. (413 aa)    
Predicted Functional Partners:
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
       0.636
Tpau_4001
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mab:MAB_1972c hypothetical protein.
 
 
 0.527
Tpau_1603
KEGG: mab:MAB_0843 hypothetical protein.
       0.518
Tpau_1604
KEGG: mab:MAB_0842 hypothetical protein.
       0.518
Tpau_1605
KEGG: mab:MAB_0841 hypothetical protein.
       0.518
Tpau_1502
PFAM: Methyltransferase type 12; Methyltransferase type 11; methyltransferase small; KEGG: kse:Ksed_01410 methylase involved in ubiquinone/menaquinone biosynthesis.
 
 
 0.506
Tpau_1601
KEGG: nfa:nfa53360 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
   
   0.470
Tpau_0617
PFAM: fumarate lyase; KEGG: art:Arth_4076 3-carboxy-cis,cis-muconate cycloisomerase.
 
  
 0.443
Tpau_1602
KEGG: mab:MAB_0844 hypothetical protein.
       0.443
Tpau_0616
KEGG: art:Arth_4077 protocatechuate 3,4- dioxygenase, alpha subunit; TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase.
  
  
 0.440
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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