Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1629KEGG: rer:RER_24560 hypothetical protein. (325 aa)    
Predicted Functional Partners:
Tpau_1628
KEGG: msm:MSMEG_2839 transcriptional accessory protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold.
       0.650
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
       0.637
Tpau_3062
PFAM: protein of unknown function UPF0089; KEGG: mab:MAB_1278 hypothetical protein.
  
     0.611
Tpau_1626
Hypothetical protein; KEGG: mxa:MXAN_1429 response regulator receiver domain/DnaJ domain-containing protein.
       0.595
Tpau_1624
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
       0.590
Tpau_1625
Hypothetical protein.
       0.590
Tpau_1627
Hypothetical protein.
       0.590
Tpau_0129
KEGG: rer:RER_05160 hypothetical protein.
  
     0.575
Tpau_2660
KEGG: nfa:nfa17510 putative lipoprotein.
  
     0.566
Tpau_2330
KEGG: mab:MAB_2408c hypothetical protein.
  
     0.558
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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