STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1663PFAM: Carboxylesterase type B; KEGG: sen:SACE_2543 putative para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. (491 aa)    
Predicted Functional Partners:
Tpau_1664
PFAM: regulatory protein TetR; KEGG: sen:SACE_2542 TetR family transcriptional regulator.
       0.549
Tpau_2343
Aminopeptidase Y; KEGG: rop:ROP_19000 putative M28A family peptidase; PFAM: peptidase M28; protease-associated PA domain protein.
  
 0.525
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
  0.481
Tpau_1811
TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; protein of unknown function DUF1605; helicase domain protein; KEGG: nfa:nfa37970 putative ATP-dependent helicase; SMART: DEAD-like helicase; helicase domain protein; AAA ATPase.
    
 0.475
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
 0.472
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.466
Tpau_1890
3'-5' exonuclease; KEGG: nfa:nfa37400 putative RNase D; PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease; HRDC domain protein.
    
  0.428
Tpau_1118
DEAD/DEAH box helicase domain protein; KEGG: rop:ROP_64170 putative ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family.
   
 0.418
deaD
DEAD/DEAH box helicase domain protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
   
 0.418
Tpau_3424
KEGG: rer:RER_23370 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
   
 0.418
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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