Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Tpau_1679KEGG: nfa:nfa41210 hypothetical protein. (86 aa)    
Predicted Functional Partners:
Tpau_2694
Rieske (2Fe-2S) iron-sulfur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: mab:MAB_1967c ubiquinol-cytochrome c reductase iron-sulfur subunit (Rieske iron-sulfur protein).
  
 
   0.972
Tpau_0816
KEGG: mab:MAB_0863 hypothetical protein.
  
 
   0.964
Tpau_1395
KEGG: rer:RER_38230 hypothetical protein.
  
 
   0.960
Tpau_1537
PFAM: cytochrome c oxidase subunit II; KEGG: nfa:nfa17080 putative cytochrome c oxidase subunit II.
  
 
   0.936
Tpau_1538
Cytochrome-c oxidase; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
 
   0.927
Tpau_2693
PFAM: cytochrome c class I; KEGG: rop:ROP_08590 menaquinol-cytochrome c reductase cytochrome c subunit.
    
   0.927
Tpau_2695
PFAM: Cytochrome b/b6 domain; KEGG: rer:RER_35980 menaquinol-cytochrome c reductase cytochrome b subunit.
    
   0.927
Tpau_2692
KEGG: mjl:Mjls_3302 cytochrome c oxidase, subunit III; PFAM: cytochrome c oxidase subunit III.
    
   0.917
Tpau_0600
KEGG: rha:RHA1_ro04458 hypothetical protein.
  
 
   0.876
Tpau_1394
KEGG: mtc:MT2544 hypothetical protein.
    
   0.846
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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