Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1694PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro01411 haloalkane dehalogenase. (277 aa)    
Predicted Functional Partners:
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
       0.768
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
     
 0.758
Tpau_2475
PFAM: alpha/beta hydrolase fold; KEGG: nfa:nfa26230 haloalkane dehalogenase.
  
     0.665
Tpau_1691
PFAM: GCN5-related N-acetyltransferase; KEGG: rer:RER_19660 hypothetical protein.
       0.588
Tpau_3656
PFAM: alpha/beta hydrolase fold; KEGG: rop:ROP_18200 putative hydrolase.
  
     0.577
Tpau_0626
PFAM: alpha/beta hydrolase fold; KEGG: rop:ROP_17460 putative non-heme haloperoxidase.
  
     0.571
Tpau_1690
PFAM: penicillin-binding protein transpeptidase; NTF2 domain protein transpeptidase; KEGG: rop:ROP_66260 putative penicillin-binding protein.
       0.473
Tpau_0475
PFAM: alpha/beta hydrolase fold; KEGG: cmi:CMM_2872 putative hydrolase/acyltransferase.
  
     0.466
Tpau_1877
PFAM: Epoxide hydrolase domain protein; alpha/beta hydrolase fold; KEGG: mem:Memar_1075 epocide hydrolase domain- containing protein.
  
     0.438
Tpau_1121
PFAM: alpha/beta hydrolase fold; KEGG: svi:Svir_06730 predicted hydrolase or acyltransferase of alpha/beta superfamily.
  
     0.420
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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