STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1704KEGG: rop:ROP_66540 putative MFS transporter; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1. (757 aa)    
Predicted Functional Partners:
Tpau_2255
PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO7346 membrane transport protein.
  
     0.723
Tpau_3939
Peptidoglycan glycosyltransferase; PFAM: glycosyl transferase family 51; PASTA domain containing protein; penicillin-binding protein transpeptidase; KEGG: rer:RER_04630 penicillin-binding protein 1; SMART: PASTA domain containing protein.
  
 
 0.707
Tpau_4192
Peptidoglycan glycosyltransferase; KEGG: nfa:nfa55570 putative penicillin-binding protein; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase.
  
 
 0.664
Tpau_0456
PFAM: major facilitator superfamily MFS_1; KEGG: bcj:BCAM1381 major facilitator superfamily protein.
  
     0.635
Tpau_2644
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
   
 
 0.580
Tpau_0209
PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_3774 major facilitator transporter.
  
     0.562
Tpau_1705
PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06618 major facilitator superfamily multidrug transporter.
 
    
0.521
Tpau_4234
Cell wall hydrolase/autolysin; KEGG: rha:RHA1_ro03652 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; Peptidoglycan- binding domain 1 protein; SMART: cell wall hydrolase/autolysin.
  
 
 0.505
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.487
Tpau_1703
uroporphyrin-III C-methyltransferase; KEGG: nfa:nfa40770 putative uroporphyrinogen III methylase; TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
       0.481
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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