Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1710KEGG: rha:RHA1_ro06639 hypothetical protein. (144 aa)    
Predicted Functional Partners:
Tpau_1711
KEGG: nfa:nfa40700 hypothetical protein.
  
    0.821
Tpau_1395
KEGG: rer:RER_38230 hypothetical protein.
  
     0.768
Tpau_1836
KEGG: rop:ROP_68000 hypothetical membrane protein.
  
     0.754
Tpau_3331
Chorismate mutase; KEGG: nfa:nfa49960 hypothetical protein; TIGRFAM: chorismate mutase; PFAM: Chorismate mutase.
  
     0.754
Tpau_2673
Conserved hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.739
Tpau_0564
KEGG: rop:ROP_43280 hypothetical membrane protein.
  
     0.729
Tpau_1778
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: mab:MAB_3067c hypothetical protein.
  
     0.729
Tpau_1470
KEGG: rer:RER_37980 hypothetical protein.
  
     0.724
Tpau_2559
PFAM: Protein of unknown function DUF2581; KEGG: rha:RHA1_ro07172 hypothetical protein.
  
     0.715
Tpau_1881
KEGG: rha:RHA1_ro06826 secreted alanine rich protein.
  
     0.711
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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