STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1714PFAM: protein of unknown function DUF448; KEGG: rha:RHA1_ro06643 hypothetical protein. (81 aa)    
Predicted Functional Partners:
rimP
Protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
  
  
 0.970
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
  
    0.939
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
  
 0.848
Tpau_1719
MATE efflux family protein; KEGG: nfa:nfa40630 putative DNA-damage-inducible protein F; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE.
   
 
 0.752
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
    0.701
Tpau_2870
KEGG: mab:MAB_0652 hypothetical protein.
 
  
 0.687
Tpau_1710
KEGG: rha:RHA1_ro06639 hypothetical protein.
       0.635
Tpau_0452
KEGG: nfa:nfa26690 hypothetical protein.
  
    0.633
Tpau_2632
KEGG: rer:RER_04540 hypothetical protein.
  
    0.633
Tpau_1716
PFAM: protein of unknown function DUF503; KEGG: nfa:nfa40660 hypothetical protein.
 
    0.629
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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