Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tpau_1722Regulatory protein, FmdB family; KEGG: rop:ROP_18420 putative regulatory protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB. (91 aa)    
Predicted Functional Partners:
Tpau_1721
Formamidase; KEGG: msm:MSMEG_4367 formamidase; PFAM: Acetamidase/Formamidase.
 
     0.933
Tpau_1723
SMART: HNH nuclease; KEGG: msm:MSMEG_4691 HNH nuclease.
       0.561
Tpau_3920
KEGG: rer:RER_50930 hypothetical protein.
  
     0.483
Tpau_2482
KEGG: mab:MAB_2917 putative hydrolase.
  
     0.435
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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