Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1781KEGG: rha:RHA1_ro06763 hypothetical protein. (380 aa)    
Predicted Functional Partners:
Tpau_1782
KEGG: nfa:nfa38490 hypothetical protein.
       0.828
Tpau_1780
KEGG: rop:ROP_67450 hypothetical membrane protein.
       0.672
Tpau_3503
PFAM: acyl-ACP thioesterase; KEGG: nfa:nfa50880 hypothetical protein.
  
     0.621
Tpau_4051
PFAM: protein of unknown function DUF1089; KEGG: rop:ROP_40830 hypothetical protein.
  
     0.610
Tpau_0084
KEGG: msm:MSMEG_2697 hypothetical protein.
 
     0.580
Tpau_1488
PFAM: acyl-ACP thioesterase; KEGG: mtb:TBMG_01985 hypothetical protein.
  
     0.553
Tpau_4225
Glycoprotein; KEGG: rha:RHA1_ro03643 glycoprotein.
  
     0.543
Tpau_1778
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: mab:MAB_3067c hypothetical protein.
       0.525
Tpau_0902
KEGG: mab:MAB_3725c hypothetical protein.
  
     0.515
Tpau_3062
PFAM: protein of unknown function UPF0089; KEGG: mab:MAB_1278 hypothetical protein.
 
   
 0.503
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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