Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1783PFAM: cell wall arabinan synthesis protein; KEGG: rop:ROP_39470 arabinosyltransferase. (1049 aa)    
Predicted Functional Partners:
Tpau_4121
KEGG: rer:RER_02330 arabinosyltransferase AftA.
 
  
 0.838
Tpau_0165
KEGG: rop:ROP_39350 arabinosyltransferase AftB.
  
  
 0.808
Tpau_0171
KEGG: mab:MAB_0178 cutinase precursor.
 
 
 0.808
Tpau_0170
KEGG: nfa:nfa1860 hypothetical protein.
 
 
 0.805
Tpau_1896
PFAM: Protein of unknown function DUF2029; KEGG: rer:RER_28550 arabinosyltransferase AftC.
  
   
 0.771
lpqB
PFAM: Lipoprotein LpqB, beta-propeller domain-like; Lipoprotein LpqB, GerMN domain; KEGG: rha:RHA1_ro06326 lipoprotein LpqB.
  
   
 0.744
Tpau_4106
PFAM: GtrA family protein; KEGG: rha:RHA1_ro04079 hypothetical protein.
 
     0.736
Tpau_0516
KEGG: nfa:nfa53740 hypothetical protein.
  
     0.730
Tpau_0600
KEGG: rha:RHA1_ro04458 hypothetical protein.
 
     0.726
Tpau_3306
KEGG: rer:RER_44250 hypothetical protein.
  
     0.707
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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