Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1792Hypothetical protein. (51 aa)    
Predicted Functional Partners:
miaB
RNA modification enzyme, MiaB family; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.590
Tpau_1788
KEGG: rop:ROP_67530 glutamate ABC transporter permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
       0.520
Tpau_1789
KEGG: mab:MAB_3052 putative glutamate ABC transporter, permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
       0.520
Tpau_1790
Extracellular solute-binding protein family 3; KEGG: mab:MAB_3051 putative glutamate ABC transporter, periplasmic protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.
       0.520
Tpau_1791
KEGG: mab:MAB_3050 putative glutamate ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.520
Tpau_1794
KEGG: rha:RHA1_ro06772 hypothetical protein.
       0.477
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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