STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1797KEGG: rha:RHA1_ro06774 hypothetical protein. (206 aa)    
Predicted Functional Partners:
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
       0.847
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.836
Tpau_1794
KEGG: rha:RHA1_ro06772 hypothetical protein.
  
     0.764
Tpau_0132
KEGG: nfa:nfa1240 hypothetical protein.
  
     0.763
Tpau_0902
KEGG: mab:MAB_3725c hypothetical protein.
  
     0.756
Tpau_0118
KEGG: mav:MAV_0179 hypothetical protein.
  
     0.749
Tpau_3625
Putative transcriptional regulator, TetR family; KEGG: nfa:nfa5580 hypothetical protein.
  
     0.740
Tpau_3546
KEGG: rop:ROP_49410 hypothetical protein.
  
     0.735
Tpau_0672
KEGG: nfa:nfa51640 hypothetical protein.
  
     0.733
Tpau_1779
KEGG: rer:RER_27430 hypothetical protein.
  
     0.732
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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