Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1876KEGG: nfa:nfa32410 hypothetical protein. (185 aa)    
Predicted Functional Partners:
Tpau_1875
Integral membrane sensor signal transduction histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: rer:RER_29170 two-component histidine kinase.
 
     0.760
Tpau_1874
KEGG: bcv:Bcav_0335 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.
       0.571
Tpau_2222
KEGG: mjl:Mjls_4332 hypothetical protein.
  
     0.489
Tpau_1877
PFAM: Epoxide hydrolase domain protein; alpha/beta hydrolase fold; KEGG: mem:Memar_1075 epocide hydrolase domain- containing protein.
       0.477
Tpau_0957
PFAM: transcriptional regulator PadR family protein; KEGG: rha:RHA1_ro06022 transcriptional regulator.
  
     0.451
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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