Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1887KEGG: msm:MSMEG_2770 integral membrane alanine and leucine rich protein. (215 aa)    
Predicted Functional Partners:
Tpau_1888
PFAM: deoxyribonuclease/rho motif-related TRAM; KEGG: mjl:Mjls_2188 deoxyribonuclease; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.836
Tpau_2978
KEGG: nfa:nfa18260 hypothetical protein.
  
 
 0.803
dxs
Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.700
Tpau_3325
KEGG: bln:Blon_0418 ABC transporter related; PFAM: ABC transporter related; ABC nitrate/sulphonate/bicarbonate family transporter, ATPase subunit; SMART: AAA ATPase.
  
 
 0.690
Tpau_1886
KEGG: mav:MAV_3587 hypothetical protein.
       0.669
ssuB
ABC transporter related protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
  
 
 0.639
Tpau_3136
ABC transporter related protein; KEGG: tfu:Tfu_1505 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.639
Tpau_3040
KEGG: rer:RER_22280 hypothetical protein; TIGRFAM: conserved hypothetical protein; PFAM: Protein of unknown function DUF2342.
  
     0.621
Tpau_1885
KEGG: nfa:nfa37520 hypothetical protein.
 
     0.563
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.463
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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