Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1899PFAM: AFG1-family ATPase; KEGG: rha:RHA1_ro06866 AFG1-like ATPase. (343 aa)    
Predicted Functional Partners:
Tpau_0967
KEGG: rop:ROP_63070 succinate dehydrogenase cytochrome b subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit.
 
   
 0.817
Tpau_0964
KEGG: nfa:nfa9460 succinate dehydrogenase iron- sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein.
 
    0.794
Tpau_0966
PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: rop:ROP_63060 succinate dehydrogenase hydrophobic membrane anchor protein.
 
     0.793
Tpau_2583
KEGG: rha:RHA1_ro07150 hypothetical protein.
  
    0.788
Tpau_0965
KEGG: rop:ROP_63050 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
 
    0.777
Tpau_1757
KEGG: msm:MSMEG_2665 hypothetical protein.
  
     0.774
Tpau_2419
KEGG: msm:MSMEG_3795 hypothetical protein.
  
     0.774
Tpau_1898
PFAM: bifunctional deaminase-reductase domain protein; KEGG: mab:MAB_2976 hypothetical protein.
       0.682
Tpau_1897
PFAM: TAP domain protein; alpha/beta hydrolase fold; KEGG: mab:MAB_2977 hypothetical protein.
       0.627
Tpau_1896
PFAM: Protein of unknown function DUF2029; KEGG: rer:RER_28550 arabinosyltransferase AftC.
       0.569
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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