Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1918KEGG: svi:Svir_09690 hypothetical protein. (184 aa)    
Predicted Functional Partners:
Tpau_1917
PFAM: Protein of unknown function, PGPGW, transmembrane; KEGG: rha:RHA1_ro06877 hypothetical protein.
       0.801
Tpau_1724
KEGG: nfa:nfa3120 hypothetical protein.
  
     0.715
Tpau_1112
KEGG: rha:RHA1_ro06347 hypothetical protein.
  
     0.661
Tpau_0144
KEGG: mab:MAB_2775c hypothetical protein.
  
     0.644
Tpau_1016
PFAM: LGFP repeat protein; KEGG: car:cauri_0314 putative secreted protein.
  
     0.635
Tpau_1916
KEGG: bcv:Bcav_3735 hypothetical protein.
       0.626
Tpau_4005
Cyclase/dehydrase; KEGG: sma:SAV_7402 cyclase/dehydrase.
  
     0.611
Tpau_2565
PFAM: LGFP repeat protein; KEGG: car:cauri_0314 putative secreted protein.
  
     0.606
thrS
KEGG: rer:RER_29030 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.605
Tpau_0897
KEGG: abo:ABO_0057 hypothetical protein.
  
     0.589
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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