Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1939PFAM: glycosyl transferase family 2; GtrA family protein; KEGG: rop:ROP_48360 putative glycosyltransferase. (415 aa)    
Predicted Functional Partners:
Tpau_1938
PFAM: glycosyl transferase family 39; KEGG: rha:RHA1_ro04745 hypothetical protein.
 
  
 0.962
Tpau_3143
PFAM: glycosyl transferase family 39; KEGG: fal:FRAAL3990 putative integral membrane protein.
 
  
 0.839
Tpau_2271
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: rha:RHA1_ro05742 sugar transferase; PFAM: sugar transferase.
 
  
 0.717
Tpau_1940
KEGG: mlu:Mlut_03530 ATP-dependent DNA helicase RecQ; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
   
 
 0.684
Tpau_0060
PFAM: glycosyl transferase group 1; glycosyl transferase family 2; KEGG: mul:MUL_4676 glycosyltransferase.
  
  
 0.584
Tpau_4101
KEGG: rop:ROP_39770 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.532
Tpau_2603
PFAM: lipopolysaccharide biosynthesis protein; KEGG: rop:ROP_55230 putative protein-tyrosine kinase.
 
  
 0.528
Tpau_1584
PFAM: lipopolysaccharide biosynthesis protein; KEGG: rha:RHA1_ro05735 protein-tyrosine kinase, C- terminal.
 
  
 0.509
Tpau_3476
KEGG: stp:Strop_2778 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; Thioesterase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding.
  
 
 0.490
Tpau_3480
Mycocerosate synthase., 6-deoxyerythronolide-B synthase; KEGG: sen:SACE_4141 type I modular polyketide synthase; PFAM: short-chain dehydrogenase/reductase SDR; Beta- ketoacyl synthase; KR domain protein; Acyl transferase; NAD-dependent epimerase/dehydratase; phosphopantetheine- binding.
  
 
 0.467
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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