Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1951KEGG: rha:RHA1_ro06905 hypothetical protein. (230 aa)    
Predicted Functional Partners:
Tpau_1949
PFAM: beta-lactamase domain protein; KEGG: mab:MAB_2873c hypothetical protein.
       0.836
hisS
TIGRFAM: histidyl-tRNA synthetase; KEGG: nfa:nfa36640 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.
       0.836
Tpau_0370
KEGG: rop:ROP_52280 hypothetical membrane protein.
  
     0.770
Tpau_0144
KEGG: mab:MAB_2775c hypothetical protein.
  
     0.767
Tpau_0904
KEGG: rer:RER_19310 hypothetical protein.
  
     0.761
Tpau_0332
Secretion protein snm4; KEGG: msm:MSMEG_0068 transmembrane protein; TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571.
  
     0.760
Tpau_3922
Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein.
  
     0.755
Tpau_1333
Hypothetical protein; KEGG: rha:RHA1_ro05481 protease.
  
     0.753
Tpau_1779
KEGG: rer:RER_27430 hypothetical protein.
  
     0.752
Tpau_2062
Hypothetical protein; KEGG: similar to CG16995 CG16995-PA.
  
     0.750
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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