Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1952PFAM: Radical SAM domain protein; KEGG: rer:RER_29600 hypothetical protein. (344 aa)    
Predicted Functional Partners:
Tpau_1954
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: scl:sce6060 hypothetical protein.
  
    0.676
Tpau_1953
KEGG: scl:sce6059 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.
       0.664
hisS
TIGRFAM: histidyl-tRNA synthetase; KEGG: nfa:nfa36640 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.
       0.646
Tpau_1955
PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mva:Mvan_5321 cobalamin synthesis protein, P47K.
       0.635
Tpau_1949
PFAM: beta-lactamase domain protein; KEGG: mab:MAB_2873c hypothetical protein.
       0.629
Tpau_1951
KEGG: rha:RHA1_ro06905 hypothetical protein.
       0.607
Tpau_0201
KEGG: mav:MAV_1056 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; DNA primase small subunit; ATP dependent DNA ligase domain protein; mRNA capping enzyme.
 
   
 0.468
Tpau_1948
KEGG: sen:SACE_2030 putative peptidyl-prolyl cis- trans isomerase.
       0.423
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.