Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Tpau_1964PFAM: conserved hypothetical protein; KEGG: rop:ROP_69110 hypothetical membrane protein. (310 aa)    
Predicted Functional Partners:
Tpau_1965
PFAM: protein of unknown function DUF404; protein of unknown function DUF403; protein of unknown function DUF407; KEGG: mbt:JTY_2584 hypothetical alanine and leucine rich protein.
       0.791
Tpau_1966
Transglutaminase domain protein; KEGG: rha:RHA1_ro07132 transglutaminase-like enzyme; PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein.
       0.791
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.751
Tpau_0962
KEGG: ami:Amir_2083 response regulator receiver.
  
     0.575
Tpau_2226
KEGG: mjl:Mjls_3957 hypothetical protein.
  
     0.546
Tpau_1962
PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: msm:MSMEG_3000 metallopeptidase, zinc binding.
       0.526
Tpau_1961
Hypothetical protein.
       0.497
Tpau_1548
KEGG: mab:MAB_1173c hypothetical protein.
  
     0.477
Tpau_0961
KEGG: rop:ROP_03210 hypothetical protein.
  
     0.440
Tpau_0104
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: bcv:Bcav_2708 peptidase M15B and M15C dd- carboxypeptidase VanY/endolysin.
  
     0.415
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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