Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tpau_1965PFAM: protein of unknown function DUF404; protein of unknown function DUF403; protein of unknown function DUF407; KEGG: mbt:JTY_2584 hypothetical alanine and leucine rich protein. (818 aa)    
Predicted Functional Partners:
Tpau_1966
Transglutaminase domain protein; KEGG: rha:RHA1_ro07132 transglutaminase-like enzyme; PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein.
 
  
 0.975
Tpau_2797
Transglutaminase domain protein; KEGG: rer:RER_37640 hypothetical protein; PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein.
 
  
 0.877
Tpau_3644
KEGG: mjl:Mjls_1224 transglutaminase domain- containing protein; PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein.
 
  
 0.874
Tpau_1964
PFAM: conserved hypothetical protein; KEGG: rop:ROP_69110 hypothetical membrane protein.
       0.791
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.743
Tpau_2798
PFAM: protein of unknown function DUF403; KEGG: rha:RHA1_ro01283 hypothetical protein.
 
   
0.684
Tpau_2799
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rha:RHA1_ro01284 hypothetical protein.
 
   
0.664
Tpau_1962
PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: msm:MSMEG_3000 metallopeptidase, zinc binding.
       0.505
Tpau_1961
Hypothetical protein.
       0.497
Tpau_0201
KEGG: mav:MAV_1056 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; DNA primase small subunit; ATP dependent DNA ligase domain protein; mRNA capping enzyme.
  
    0.471
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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