Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Tpau_1976Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (161 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.950
Tpau_1978
Shikimate-5-dehydrogenase; KEGG: rop:ROP_69190 shikimate dehydrogenase; TIGRFAM: shikimate-5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; Belongs to the shikimate dehydrogenase family.
  
    0.851
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
    0.850
Tpau_1980
PFAM: peptidase A24A prepilin type IV; KEGG: mva:Mvan_2644 peptidase A24A, prepilin type IV.
       0.817
Tpau_1979
KEGG: mkm:Mkms_2777 thioesterase superfamily protein.
       0.778
Tpau_1973
KEGG: rop:ROP_69140 hypothetical protein.
       0.715
Tpau_1974
AAA ATPase central domain protein; KEGG: rop:ROP_69150 putative AAA family ATPase; PFAM: AAA ATPase central domain protein; magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
       0.715
Tpau_4219
PFAM: protein of unknown function DUF179; KEGG: mmi:MMAR_0053 hypothetical protein; Belongs to the UPF0301 (AlgH) family.
  
  
 0.715
Tpau_1981
KEGG: msm:MSMEG_2177 fmnh2-utilizing oxygenase.
       0.605
Tpau_1982
Luciferase family oxidoreductase, group 1; KEGG: mav:MAV_2049 hypothetical protein; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup.
       0.605
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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