Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1987KEGG: cai:Caci_3799 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (256 aa)    
Predicted Functional Partners:
Tpau_1988
KEGG: cai:Caci_3798 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
 0.998
Tpau_0790
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: extracellular solute-binding protein family 3; binding-protein-dependent transport systems inner membrane component; KEGG: mkm:Mkms_5030 polar amino acid ABC transporter, inner membrane subunit; SMART: extracellular solute-binding protein family 3.
 
 0.937
Tpau_2052
KEGG: kra:Krad_0928 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.902
Tpau_1788
KEGG: rop:ROP_67530 glutamate ABC transporter permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.897
Tpau_1789
KEGG: mab:MAB_3052 putative glutamate ABC transporter, permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.896
Tpau_1986
KEGG: cai:Caci_3769 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.
 
 
 0.872
Tpau_2050
Extracellular solute-binding protein family 3; KEGG: sgr:SGR_5758 putative ABC transporter substrate-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.
 
 
 0.799
Tpau_3754
Extracellular solute-binding protein family 3; KEGG: rop:ROP_19090 putative ABC transporter substrate-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.
 
 
 0.788
Tpau_1790
Extracellular solute-binding protein family 3; KEGG: mab:MAB_3051 putative glutamate ABC transporter, periplasmic protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.
 
 
 0.771
Tpau_1990
Integral membrane sensor signal transduction histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sco:SCO4362 two component system sensor kinase.
       0.644
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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