Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2001KEGG: cmi:CMM_2657 putative phosphatase; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related. (378 aa)    
Predicted Functional Partners:
Tpau_2478
PFAM: GCN5-related N-acetyltransferase; KEGG: mgm:Mmc1_2934 GCN5-related N- acetyltransferase.
 
   
 0.663
Tpau_2066
KEGG: mjl:Mjls_0871 hypothetical protein.
 
     0.635
Tpau_0123
KEGG: svi:Svir_26770 hypothetical protein.
  
     0.567
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.561
Tpau_3984
KEGG: ami:Amir_0216 hypothetical protein.
 
     0.557
Tpau_3618
KEGG: rer:RER_17430 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
  
     0.543
Tpau_2065
KEGG: msm:MSMEG_0369 hypothetical protein.
  
     0.539
Tpau_2003
KEGG: mjl:Mjls_3089 hypothetical protein.
       0.509
Tpau_3378
KEGG: nfa:nfa8520 hypothetical protein.
  
 
 
 0.489
Tpau_0121
Putative transcriptional regulator, XRE family; KEGG: cai:Caci_8936 hypothetical protein.
  
     0.488
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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