Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2059KEGG: rha:RHA1_ro07204 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (542 aa)    
Predicted Functional Partners:
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.630
rpsP
KEGG: msm:MSMEG_2435 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
 
   0.609
rpsI
PFAM: ribosomal protein S9; KEGG: rop:ROP_62310 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
 
   0.602
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
  
   0.602
rplD
Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.
   
 
 0.589
Tpau_2058
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mab:MAB_0124 hypothetical protein; SMART: GGDEF domain containing protein.
       0.584
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
   0.581
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.579
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
   0.572
rpmD
Ribosomal protein L30; KEGG: nfa:nfa7920 putative ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30.
   
   0.570
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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