STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_2060PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mva:Mvan_0398 short-chain dehydrogenase/reductase SDR. (264 aa)    
Predicted Functional Partners:
Tpau_1315
PFAM: MaoC domain protein dehydratase; Beta- ketoacyl synthase; Acyl transferase; domain of unknown function DUF1729; KEGG: nfa:nfa12570 putative fatty acid synthase.
  
 0.725
Tpau_2061
PFAM: peptidase C60 sortase A and B; KEGG: rer:RER_32360 hypothetical protein.
  
    0.707
Tpau_2062
Hypothetical protein; KEGG: similar to CG16995 CG16995-PA.
  
    0.707
Tpau_2701
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rme:Rmet_1333 acetoacetyl-CoA reductase.
  
     0.544
Tpau_0389
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rop:ROP_38490 putative oxidoreductase.
  
     0.511
Tpau_1613
KEGG: cai:Caci_2470 hypothetical protein.
   
 
 0.432
Tpau_2981
PFAM: sulfatase; KEGG: rer:RER_16070 arylsulfatase.
   
 
 0.432
Tpau_3336
PFAM: sulfatase; KEGG: rha:RHA1_ro01269 sulfatase.
   
 
 0.432
Tpau_0407
Histidine kinase; KEGG: rer:RER_40240 two-component histidine kinase; PFAM: ATP-binding region ATPase domain protein; cyclic nucleotide-binding; SMART: ATP-binding region ATPase domain protein.
   
 0.414
Tpau_3693
Amino acid adenylation domain protein; KEGG: rop:ROP_20370 non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein.
  
 
 0.405
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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