Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Tpau_2068KEGG: mgi:Mflv_1048 hypothetical protein. (171 aa)    
Predicted Functional Partners:
Tpau_2067
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sen:SACE_6355 glycerophosphoryl diester phosphodiesterase.
       0.554
Tpau_2069
PFAM: protein of unknown function DUF218; KEGG: rha:RHA1_ro05676 hypothetical protein.
       0.541
Tpau_2064
KEGG: sml:Smlt4656 hypothetical protein.
       0.402
Tpau_2065
KEGG: msm:MSMEG_0369 hypothetical protein.
       0.402
Tpau_2066
KEGG: mjl:Mjls_0871 hypothetical protein.
       0.402
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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