Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_2084KEGG: rha:RHA1_ro07216 hypothetical protein. (261 aa)    
Predicted Functional Partners:
Tpau_1779
KEGG: rer:RER_27430 hypothetical protein.
  
     0.752
Tpau_0564
KEGG: rop:ROP_43280 hypothetical membrane protein.
  
     0.738
Tpau_0142
KEGG: rer:RER_01850 hypothetical protein.
  
     0.737
Tpau_0332
Secretion protein snm4; KEGG: msm:MSMEG_0068 transmembrane protein; TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571.
  
     0.725
Tpau_2865
KEGG: rop:ROP_65380 hypothetical membrane protein.
  
     0.723
Tpau_1829
KEGG: mmi:MMAR_2001 hypothetical protein.
  
     0.717
Tpau_0864
Secretion protein snm4; KEGG: nfa:nfa8270 hypothetical protein; TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571.
  
     0.711
Tpau_0331
KEGG: msm:MSMEG_0067 hypothetical protein.
  
     0.702
Tpau_3922
Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein.
  
     0.695
Tpau_2242
KEGG: nfa:nfa51010 hypothetical protein.
  
     0.692
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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