Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tpau_2090PFAM: protein of unknown function DUF107; KEGG: rop:ROP_70060 hypothetical membrane protein. (143 aa)    
Predicted Functional Partners:
Tpau_2091
Band 7 protein; KEGG: rop:ROP_70070 stomatin family protein; PFAM: band 7 protein; SMART: band 7 protein.
 
 
 0.954
cobS
Cobalamin-5-phosphate synthase CobS; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
    0.816
Tpau_2190
precorrin-3B C17-methyltransferase; KEGG: rer:RER_31440 precorrin-2 C(20)- methyltransferase/precorrin-3B C(17)-methyltransferase; TIGRFAM: precorrin-3B C17-methyltransferase; precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
  
    0.704
Tpau_2287
PFAM: band 7 protein; KEGG: rer:RER_05390 hypothetical protein.
  
  
 0.586
Tpau_2084
KEGG: rha:RHA1_ro07216 hypothetical protein.
 
   
 0.565
Tpau_2088
KEGG: rha:RHA1_ro05227 hypothetical protein.
       0.529
Tpau_2089
Hypothetical protein; KEGG: mbt:JTY_0967 putative monooxygenase.
       0.529
Tpau_0764
PFAM: protein of unknown function DUF307; KEGG: ami:Amir_0476 protein of unknown function DUF307.
   
    0.502
Tpau_2085
KEGG: nfa:nfa34730 hypothetical protein.
 
     0.462
Tpau_3863
Band 7 protein; KEGG: cef:CE2656 hypothetical protein; PFAM: band 7 protein; SMART: band 7 protein.
  
 
 0.441
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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