Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tpau_2092KEGG: rha:RHA1_ro07229 hypothetical protein. (192 aa)    
Predicted Functional Partners:
Tpau_2093
KEGG: rop:ROP_70140 hypothetical protein.
 
     0.961
Tpau_0689
PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: mgi:Mflv_0052 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
   
 0.753
Tpau_3929
PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: rer:RER_04830 thiol-disulfide oxidoreductase.
   
 0.753
Tpau_2094
PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: art:Arth_4391 C4-dicarboxylate transporter/malic acid transport protein.
       0.690
Tpau_3617
Peroxiredoxin; KEGG: rop:ROP_49080 putative glutathione peroxidase; PFAM: glutathione peroxidase; Belongs to the glutathione peroxidase family.
    
 0.507
Tpau_2095
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bcv:Bcav_0524 transcriptional regulator, LysR family.
       0.497
Tpau_1071
KEGG: rop:ROP_16860 hypothetical protein.
  
     0.469
Tpau_0735
KEGG: rop:ROP_16860 hypothetical protein.
  
     0.460
Tpau_0922
KEGG: rha:RHA1_ro06212 hypothetical protein.
  
     0.424
Tpau_0909
KEGG: bcv:Bcav_0529 hypothetical protein.
  
     0.411
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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