Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2094PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: art:Arth_4391 C4-dicarboxylate transporter/malic acid transport protein. (395 aa)    
Predicted Functional Partners:
Tpau_2095
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bcv:Bcav_0524 transcriptional regulator, LysR family.
 
     0.739
Tpau_2092
KEGG: rha:RHA1_ro07229 hypothetical protein.
       0.690
Tpau_2093
KEGG: rop:ROP_70140 hypothetical protein.
       0.690
Tpau_0185
1-phosphofructokinase; KEGG: mkm:Mkms_0090 ribokinase-like domain- containing protein; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.
  
    0.450
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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