Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_2123PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nfa:nfa25540 putative short chain dehydrogenase. (485 aa)    
Predicted Functional Partners:
Tpau_0980
TIGRFAM: uracil phosphoribosyltransferase; KEGG: rop:ROP_63160 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; Belongs to the UPRTase family.
 
      0.811
Tpau_2122
PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: rha:RHA1_ro07236 purine nucleosidase.
       0.645
Tpau_2121
KEGG: sen:SACE_3425 hypothetical protein.
       0.642
Tpau_1315
PFAM: MaoC domain protein dehydratase; Beta- ketoacyl synthase; Acyl transferase; domain of unknown function DUF1729; KEGG: nfa:nfa12570 putative fatty acid synthase.
  
 0.632
Tpau_2120
KEGG: sen:SACE_3690 hypothetical protein.
       0.625
Tpau_2124
TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; KEGG: afw:Anae109_0595 carbohydrate kinase; PFAM: shikimate kinase.
     
 0.572
Tpau_2119
KEGG: rha:RHA1_ro02469 hypothetical protein.
       0.524
Tpau_1373
Thioester reductase domain protein; KEGG: mab:MAB_2962 fatty-acid-CoA ligase FadD; TIGRFAM: thioester reductase domain protein; PFAM: Male sterility domain; AMP-dependent synthetase and ligase; phosphopantetheine-binding.
  
 
 0.502
Tpau_0860
PFAM: carboxyl transferase; KEGG: rer:RER_45670 acetyl-CoA carboxylase beta chain.
 
  
 0.476
Tpau_3693
Amino acid adenylation domain protein; KEGG: rop:ROP_20370 non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein.
  
 
 0.412
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.