Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_2126PFAM: protein of unknown function DUF417; KEGG: mmr:Mmar10_2310 hypothetical protein. (155 aa)    
Predicted Functional Partners:
Tpau_2125
KEGG: sen:SACE_2856 hypothetical protein.
 
     0.699
Tpau_0881
Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein.
  
     0.642
Tpau_3922
Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein.
  
     0.624
Tpau_2062
Hypothetical protein; KEGG: similar to CG16995 CG16995-PA.
  
     0.623
Tpau_1333
Hypothetical protein; KEGG: rha:RHA1_ro05481 protease.
  
     0.611
Tpau_0334
KEGG: mgi:Mflv_5453 hypothetical protein.
  
     0.606
Tpau_0079
PFAM: glycoside hydrolase family 5; KEGG: xop:PXO_03301 endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.591
Tpau_1406
KEGG: mab:MAB_0672c hypothetical protein.
  
     0.570
Tpau_0400
PFAM: MgtE intracellular region; KEGG: similar to gag protein.
  
     0.569
Tpau_1779
KEGG: rer:RER_27430 hypothetical protein.
  
     0.565
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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