Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_2139KEGG: nfa:nfa29330 hypothetical protein. (263 aa)    
Predicted Functional Partners:
Tpau_2138
KEGG: rer:RER_32000 hypothetical protein.
 
    0.962
Tpau_2137
PFAM: Phosphoglycerate mutase; KEGG: mgi:Mflv_3044 phosphoglycerate mutase.
 
     0.925
Tpau_4096
KEGG: mab:MAB_1644 hypothetical protein.
    
 0.862
mshC
cysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.
 
     0.782
Tpau_0770
SNF2-related protein; KEGG: rha:RHA1_ro01653 helicase; PFAM: SNF2-related protein; zinc finger SWIM domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
   
 0.726
Tpau_1215
SNF2-related protein; KEGG: nfa:nfa10310 putative helicase; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
   
 0.726
mshB
1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-gluc opyranosidedeacetylase; Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2- deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway.
  
     0.647
Tpau_2141
Hypothetical protein.
       0.609
Tpau_3298
SMART: von Willebrand factor type A; KEGG: mjl:Mjls_4693 von Willebrand factor, type A.
 
     0.571
Tpau_2142
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: ami:Amir_3008 type I phosphodiesterase/nucleotide pyrophosphatase.
 
     0.566
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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