STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_2214PFAM: protein of unknown function DUF305; KEGG: rha:RHA1_ro05613 hypothetical protein. (207 aa)    
Predicted Functional Partners:
Tpau_3506
PFAM: protein of unknown function DUF305; KEGG: rer:RER_11580 hypothetical protein.
 
     0.768
Tpau_2215
KEGG: rha:RHA1_ro05612 hypothetical protein.
       0.562
Tpau_2216
GntR domain protein; KEGG: mab:MAB_2272c putative transcriptional regulator, GntR; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
       0.470
Tpau_2213
Hypothetical protein; KEGG: bpy:Bphyt_6225 ABC-type sugar transport system periplasmic component-like protein.
       0.437
Tpau_2217
PFAM: major facilitator superfamily MFS_1; KEGG: mab:MAB_2273 MFS family transporter.
 
     0.426
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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