Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2236KEGG: aau:AAur_2842 rifampin ADP-ribosyl transferase. (136 aa)    
Predicted Functional Partners:
Tpau_2237
PFAM: acid phosphatase (Class B); KEGG: sco:SCO3371 hypothetical protein.
       0.705
Tpau_3242
PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: rha:RHA1_ro06414 major facilitator superfamily multidrug transport protein.
   
    0.604
Tpau_4204
PFAM: major facilitator superfamily MFS_1; KEGG: sen:SACE_7328 multidrug resistance efflux transporter.
   
    0.604
murA
UDP-N-acetylglucosamine1- carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
     
 0.525
Tpau_2238
PFAM: protein of unknown function DUF6 transmembrane; KEGG: bln:Blon_1408 protein of unknown function DUF6, transmembrane.
       0.476
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
      
 0.457
Tpau_2233
KEGG: mva:Mvan_3222 arsenical-resistance protein; TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter.
     
 0.410
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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