Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2249PFAM: protein of unknown function DUF140; KEGG: rha:RHA1_ro01972 hypothetical protein. (279 aa)    
Predicted Functional Partners:
Tpau_2248
KEGG: nfa:nfa51070 putative Mce family protein; TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein.
 
 
 0.984
Tpau_2246
KEGG: rha:RHA1_ro01969 Mce family protein; TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein.
 
 
 0.982
Tpau_2244
KEGG: rer:RER_17290 Mce family protein; TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein.
 
 
 0.976
Tpau_2247
KEGG: rop:ROP_16480 putative Mce family protein; TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein.
 
 
 0.975
Tpau_2245
KEGG: rop:ROP_16460 putative Mce family protein; TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein.
 
 
 0.956
Tpau_2243
KEGG: rer:RER_17300 Mce family protein; TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein.
 
 
 0.955
Tpau_0752
KEGG: nfa:nfa51100 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
  0.953
Tpau_2250
PFAM: protein of unknown function DUF140; KEGG: rop:ROP_16510 putative YrbE family protein.
 
 
0.906
Tpau_4174
PFAM: Mammalian cell entry related domain protein; KEGG: nfa:nfa11170 putative Mce family protein.
 
 
 0.874
Tpau_3793
PFAM: Mammalian cell entry related domain protein; KEGG: rop:ROP_18090 putative Mce family protein.
 
 
 0.870
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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