STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_2251KEGG: mva:Mvan_0102 TetR family transcriptional regulator. (187 aa)    
Predicted Functional Partners:
Tpau_2252
KEGG: rer:RER_00810 hypothetical protein.
       0.605
Tpau_3514
KEGG: nfa:nfa28630 hypothetical protein.
  
     0.553
Tpau_2253
Glycoside hydrolase family 10; KEGG: sma:SAV_4984 beta-1,4-xylanase; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10.
       0.543
Tpau_2857
Putative transcriptional regulator, PucR family; KEGG: mmi:MMAR_1323 hypothetical protein.
  
     0.438
Tpau_4140
PFAM: GCN5-related N-acetyltransferase; KEGG: mab:MAB_2959 putative acetyltransferase.
  
     0.409
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.