Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2256PFAM: secretory lipase; KEGG: mkm:Mkms_1963 secretory lipase. (397 aa)    
Predicted Functional Partners:
Tpau_2255
PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO7346 membrane transport protein.
 
     0.802
Tpau_2257
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rop:ROP_60670 putative alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.697
Tpau_3188
KEGG: nfa:nfa24020 putative lipase; PFAM: secretory lipase.
  
     0.551
Tpau_0170
KEGG: nfa:nfa1860 hypothetical protein.
  
     0.478
Tpau_0171
KEGG: mab:MAB_0178 cutinase precursor.
  
     0.446
Tpau_0179
PFAM: putative esterase; KEGG: rop:ROP_50250 mycolyltransferase.
 
  
 0.408
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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