Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2259PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rop:ROP_04530 flavin-containing amine oxidase. (459 aa)    
Predicted Functional Partners:
Tpau_1458
Diamine N-acetyltransferase; KEGG: nfa:nfa27360 putative acetyltransferase; PFAM: GCN5-related N-acetyltransferase.
     
  0.900
Tpau_2391
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: msm:MSMEG_2034 aryl-alcohol dehydrogenase.
     
  0.900
Tpau_2883
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rha:RHA1_ro05321 alcohol dehydrogenase.
     
  0.900
Tpau_2258
PFAM: regulatory protein TetR; KEGG: nfa:nfa9270 putative transcriptional regulator.
       0.773
Tpau_1832
Histone deacetylase; KEGG: rer:RER_28020 acetoin utilization protein; PFAM: histone deacetylase superfamily.
   
 0.647
Tpau_2260
PFAM: regulatory protein TetR; KEGG: mab:MAB_0341 TetR family transcriptional regulator.
 
     0.603
Tpau_0770
SNF2-related protein; KEGG: rha:RHA1_ro01653 helicase; PFAM: SNF2-related protein; zinc finger SWIM domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
    
 0.427
Tpau_1215
SNF2-related protein; KEGG: nfa:nfa10310 putative helicase; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
    
 0.427
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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