Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2265PFAM: beta-lactamase; KEGG: mab:MAB_0064c lipase LipE. (417 aa)    
Predicted Functional Partners:
Tpau_3803
KEGG: mab:MAB_1289c hypothetical protein.
  
     0.676
Tpau_1019
KEGG: mab:MAB_0680c hypothetical protein.
 
     0.638
Tpau_2264
PFAM: YhhN family protein; KEGG: nca:Noca_2687 YhhN family protein.
       0.563
Tpau_3062
PFAM: protein of unknown function UPF0089; KEGG: mab:MAB_1278 hypothetical protein.
 
    0.540
Tpau_2466
PFAM: Uncharacterised conserved protein UCP07580; KEGG: rop:ROP_04670 hypothetical protein.
  
     0.532
Tpau_1931
Acyltransferase, WS/DGAT/MGAT; KEGG: rha:RHA1_ro01601 hypothetical protein; TIGRFAM: acyltransferase, WS/DGAT/MGAT; PFAM: protein of unknown function UPF0089; Belongs to the long-chain O-acyltransferase family.
  
     0.527
Tpau_3514
KEGG: nfa:nfa28630 hypothetical protein.
  
     0.499
Tpau_2263
Transcriptional regulator, MerR family; KEGG: kse:Ksed_03030 predicted transcriptional regulator; PFAM: transcription activator effector binding; regulatory protein MerR; SMART: regulatory protein MerR.
       0.491
Tpau_2592
KEGG: mmi:MMAR_2781 hypothetical protein; Belongs to the UPF0312 family.
 
     0.427
Tpau_3513
PFAM: FAD dependent oxidoreductase; KEGG: nfa:nfa28620 putative monooxygenase.
  
     0.420
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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