Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Tpau_2309PFAM: protein of unknown function DUF1470; KEGG: art:Arth_4103 hypothetical protein. (189 aa)    
Predicted Functional Partners:
Tpau_2308
PFAM: protein of unknown function DUF6 transmembrane; KEGG: nca:Noca_1792 hypothetical protein.
 
   
 0.907
Tpau_2310
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mva:Mvan_3078 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.564
Tpau_3781
PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: mab:MAB_0509c peptidase M1, membrane alanine aminopeptidase.
  
     0.538
Tpau_1465
KEGG: sma:SAV_1878 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
     0.417
Tpau_3343
PFAM: protein of unknown function DUF161; KEGG: rha:RHA1_ro06449 hypothetical protein.
  
     0.412
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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