Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_2329KEGG: lxx:Lxx20650 hypothetical protein. (273 aa)    
Predicted Functional Partners:
Tpau_2330
KEGG: mab:MAB_2408c hypothetical protein.
 
     0.796
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
       0.778
Tpau_3490
KEGG: aoe:Clos_2750 hypothetical protein.
  
 
   0.644
Tpau_2326
PFAM: chalcone and stilbene synthase domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: nfa:nfa49290 putative type III polyketide synthase.
       0.638
Tpau_2327
TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; KEGG: nfa:nfa49280 putative ABC transporter ATP- binding protein; SMART: AAA ATPase.
       0.636
Tpau_2325
PFAM: cytochrome b5; fatty acid desaturase; KEGG: nfa:nfa49300 hypothetical protein.
  
  
 0.580
Tpau_1417
Agmatinase; KEGG: rer:RER_05760 agmatinase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
  
  
 0.558
Tpau_0597
KEGG: rha:RHA1_ro04450 hypothetical protein.
  
     0.512
Tpau_0452
KEGG: nfa:nfa26690 hypothetical protein.
  
    0.486
Tpau_4229
PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: ckp:ckrop_0287 delta-1-pyrroline-5- carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.470
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.