Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2380KEGG: sco:SCO0224 hypothetical protein. (339 aa)    
Predicted Functional Partners:
Tpau_2378
KEGG: rer:RER_32630 channel protein.
       0.514
Tpau_2379
KEGG: rha:RHA1_ro00933 hypothetical protein.
       0.514
Tpau_0963
KEGG: sco:SCO0604 hypothetical protein.
  
     0.502
Tpau_1548
KEGG: mab:MAB_1173c hypothetical protein.
  
     0.473
Tpau_0391
Dual specificity protein phosphatase; KEGG: sma:SAV_5613 hypothetical protein.
  
     0.453
Tpau_0246
SMART: serine/threonine protein kinase; KEGG: sen:SACE_4230 serine/threonine protein kinase.
  
     0.431
xerD
Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.402
Tpau_2376
PFAM: NUDIX hydrolase; KEGG: mjl:Mjls_2958 NUDIX hydrolase.
       0.402
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
       0.402
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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